SOAPdenovo31mer pregraph -s test_05.cfg -o test_05 -p 24 Version 1.3: released on Nov 23th, 2009 In test_05.cfg, 1 libs, max seq len 1195, max name len 256 24 thread created read from file: test_1.fa time spent on hash reads: 10s, 129244 reads processed [LIB] 0, avg_ins 10000, reverse 1 22311858 nodes allocated, 12022388 kmer in reads, 12022388 kmer processed *** glibc detected *** SOAPdenovo31mer: free(): invalid pointer: 0x00000000089b0203 *** ======= Backtrace: ========= [0x44cd16] [0x450857] [0x40472d] [0x400316] [0x434e93] [0x440250] [0x4001b9] ======= Memory map: ======== 00400000-004d4000 r-xp 00000000 08:01 25826017 /usr/local/bin/SOAPdenovo 006d4000-006d6000 rw-p 000d4000 08:01 25826017 /usr/local/bin/SOAPdenovo 006d6000-00750000 rw-p 00000000 00:00 0 026d3000-08a5e000 rw-p 00000000 00:00 0 [heap] 41810000-41811000 ---p 00000000 00:00 0 .....
Turns out the problem wasn't my input, but my configuration settings. The library had reverse_seq=1 for a single-read fasta file. Returning reverse_seq=0 fixed my problem...
No comments:
Post a Comment