After venting all my tribulations in an unpublished blog post. Here is how you install ABySS 1.2.7 on OS X. Keep in mind you need X Code installed.
- download 1.2.7
- make a directory and enter it:
mkdir MAKE cd MAKE- run configure. You can set the path of installation with prefix, if desired (it automatically will install in /bin). Then make to install:
../configure --disable-openmp --prefix=/usr/local make AM_CXXFLAGS=-Wall sudo make install- add ABySS to your path (in .profile).
Booya! Now ABySS finally works! I'm not sure if this will work with mpi; See this wiki for details.
